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Islands: Palaeontology, Geology and Tectonics Naturalis
Donovan, S.K..
The intention of this Lyell Meeting is to bring together tectonicists, geologists, palaeontologists and geomorphologists to discuss the intersection of their specialisms in the geology of islands.
Tipo: Article / Letter to the editor Palavras-chave: Lyell meetings; Islands; Geology; Palaeontology; Tectonics; Evolution; Isolation; 38.20; 38.37; 38.22.
Ano: 2011 URL: http://www.repository.naturalis.nl/record/428038
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Karyotype characterization and ZZ/ZW sex chromosome heteromorphism in two species of the catfish genus Ancistrus Kner, 1854 (Siluriformes: Loricariidae) from the Amazon basin Neotropical Ichthyology
Oliveira,Renildo R. de; Feldberg,Eliana; Anjos,Maeda B. dos; Zuanon,Jansen.
We present karyotypic characteristics and report on the occurrence of ZZ/ZW sex chromosomes in Ancistrus ranunculus (rio Xingu) and Ancistrus sp. "Piagaçu" (rio Purus), of the Brazilian Amazon. Ancistrus ranunculus has a modal number of 2n=48 chromosomes, a fundamental number (FN) of 82 for both sexes, and the karyotypic formula was 20m+8sm+6st+14a for males and 19m+9sm+6st+14a for females. Ancistrus sp. "Piagaçu" presented 2n=52 chromosomes, FN= 78 for males and FN= 79 for females. The karyotypic formula was 16m+8sm+2st+26a for males and 16m+9sm+2st+25a for females. The high number of acrocentric chromosomes in karyotype of Ancistrus sp. "Piagaçu" differs from the majority of Ancistrini genera studied so far, and may have resulted from pericentric...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Hypostominae; Ancistrini; Cytogenetics; Evolution; Heterochromatin.
Ano: 2007 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1679-62252007000300010
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Karyotype characterization of Trigona fulviventris Guérin, 1835 (Hymenoptera, Meliponini) by C banding and fluorochrome staining: report of a new chromosome number in the genus Genet. Mol. Biol.
Domingues,Alayne Magalhães Trindade; Waldschmidt,Ana Maria; Andrade,Sintia Emmanuelle; Andrade-Souza,Vanderly; Alves,Rogério Marco de Oliveira; Silva Junior,Juvenal Cordeiro da; Costa,Marco Antônio.
Although many species of the genus Trigona have been taxonomically described, cytogenetic studies of these species are still rare. The aim of the present study was to obtain cytogenetic data by conventional staining, C banding and fluorochrome staining for the karyotype characterization of the species Trigona fulviventris. Cytogenetic analysis revealed that this species possesses a diploid chromosome number of 2n = 32, different from most other species of this genus studied so far. This variation was probably due to the centric fusion in a higher numbered ancestral karyotype, this fusion producing the large metacentric chromosome pair and the lower chromosome number observed in Trigona fulviventris. Heterochromatin was detected in the pericentromeric...
Tipo: Info:eu-repo/semantics/other Palavras-chave: Cytogenetics; Heterochromatin; Evolution; Stingless bees.
Ano: 2005 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572005000300009
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Left-right asymmetry in plants and animals: a gold mine for research Naturalis
Schilthuizen, M.; Gravendeel, B..
Left-right asymmetry patterns in the body shapes of animals and plants have been a continuous source of interest among biologists. Recently, inroads have been made to developing a coherent research programme that makes use of the unique fact that chiral patterns may be studied (and generalities deduced) by comparisons across many unrelated groups, even across Kingdoms. The papers delivered at the symposium ‘Evolution of Chirality’ during the 2011 European congress of evolutionary biology (ESEB) provide examples of the various research programs that are currently developing within this field. The present paper provides a summary of the symposium, an introduction to this Special Issue of Contributions to Zoology, as well as suggestions for further...
Tipo: Article / Letter to the editor Palavras-chave: Chirality; Development; Evolution; Evo-devo; 42.21.
Ano: 2012 URL: http://www.repository.naturalis.nl/record/419170
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Les agricultures familiales du sertao en mouvement. Infoteca-e
SABOURIN, E.; CARON, P..
Les réalités de I'agriculture familiale nordestine sont plurielles. Contrairement aux discours dominants, qui évoquent invariablement· le petit producteur et son immobilisme, les agricultures familiales connaissent de p rofondes mutations techniques, économiques et sociales. Les résultats des travaux présentés dans cet ouvrage confirment combien les mots d'ordre développementalistes correspondent à des perceptions idéologiques ou déformées de Ia réalité. A leur façon, les connaissances produites cherchent ici à corriger les représentations figées qui prévalent trop souvent.
Tipo: Capítulo em livro técnico (INFOTECA-E) Palavras-chave: Evolucao; Desenvolvimento; Sertao; Familiar farms; Development; Brasil; Nordeste; Semiarid region; Agricultura Familiar; Evolution.
Ano: 2001 URL: http://www.infoteca.cnptia.embrapa.br/infoteca/handle/doc/134417
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Life on a block of limestone: Evolutionary, ecological and geological dynamics of isolated malacofaunas on tropical karst Naturalis
Schilthuizen, M..
The karst formations of southeast Asia are a wonderful evolutionary and ecological experiment, and a sad example of observable extinction (Clements et al., 2006). In this paper, I shall focus on those in Malaysia and, in particular, on the land snail faunas that they support.
Tipo: Article / Letter to the editor Palavras-chave: Karst formations; Southeast Asia; Malaysia; Evolution; Snails; 38.22; 42.73.
Ano: 2011 URL: http://www.repository.naturalis.nl/record/428472
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Long-range PCR and high-throughput sequencing of Ostreid herpesvirus 1 indicate high genetic diversity and complex evolution process ArchiMer
Bai, Chang-ming; Morga, Benjamin; Rosani, Umberto; Shi, Jie; Li, Chen; Xin, Lu-sheng; Wang, Chong-ming.
Ostreid herpesvirus 1 (OsHV-1) is an important pathogen associated with mass mortalities of cultivated marine mollusks worldwide. Since no cell line allows OsHV-1 replication in vitro, it is difficult to isolate enough high-purity viral DNA for High-Throughput Sequencing (HTS). We developed an efficient approach for the enrichment of OsHV-1 DNA for HTS with long-range PCR. Twenty-three primer pairs were designed to cover 99.3% of the reference genome, and their performances were examined on ten OsHV-1 infected samples. Amplicon mixtures from six successfully amplified samples were sequenced with Illumina platform, and one of them (ZK0118) was also sequenced with the PacBio platform. PacBio reads were assembled into 2 scaffolds compared to 9−68 scaffolds...
Tipo: Text Palavras-chave: Long-range PCR; OsHV-1; High-throughput sequencing; Evolution; Diversity.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00464/57566/64184.pdf
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Long-wavelength sensitive opsin (LWS) gene variability in Neotropical cichlids (Teleostei: Cichlidae) Anais da ABC (AABC)
FABRIN,THOMAZ M.C.; PRIOLI,SONIA MARIA A.P.; PRIOLI,ALBERTO JOSÉ.
ABSTRACT Cichlid fishes are an important group in evolutionary biology due to their fast speciation. This group depends widely of vision for feeding and reproduction. During the evolutionary process it plays a significant role in interspecific and intraspecific recognition and in its ecology. The molecular basis of vision is formed by the interaction of the protein opsin and retinal chromophore. Long-wavelength sensitive opsin (LWS) gene is the most variable among the opsin genes and it has an ecological significance. Current assay identifies interspecific variation of Neotropical cichlids that would modify the spectral properties of the LWS opsin protein and codons selected. Neotropical species present more variable sites for LWS gene than those of the...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Convergence; Ecology; Evolution; Visual system..
Ano: 2017 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0001-37652017000100213
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Low cytomolecular diversification in the genus Stylosanthes Sw. (Papilionoideae, Leguminosae) Genet. Mol. Biol.
Franco,Ana Luiza; Figueredo,Amanda; Pereira,Lívia de Moraes; Sousa,Saulo Marçal de; Souza,Gustavo; Carvalho,Marcelo Ayres; Simon,Marcelo F.; Viccini,Lyderson Facio.
Abstract Stylosanthes (Papilionoideae, Leguminosae) is a predominantly Neotropical genus with ~48 species that include worldwide important forage species. This study presents the chromosome number and morphology of eight species of the genus Stylosanthes (S. acuminata, S. gracilis, S. grandifolia, S. guianensis, S. hippocampoides, S. pilosa, S. macrocephala, and S. ruellioides). In addition, staining with CMA and DAPI, in situ hybridization with 5S and 35S rDNA probes, and estimation of DNA content were performed. The interpretation of Stylosanthes chromosome diversification was anchored by a comparison with the sister genus Arachis and a dated molecular phylogeny based on nuclear and plastid loci. Stylosanthes species showed 2n = 20, with low...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Arachis; Cytogenetics; Evolution; Leguminosae; Stylosanthes.
Ano: 2020 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572020000100306
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Malassezia vespertilionis sp. nov.: a new cold-tolerant species of yeast isolated from bats Naturalis
Lorch, J.M.; Palmer, J.M.; Vanderwolf, K.J.; Schmidt, K.Z.; Verant, M.L.; Weller, T.J.; Blehert, D.S..
Malassezia is a genus of medically-important, lipid-dependent yeasts that live on the skin of warmblooded animals. The 17 described species have been documented primarily on humans and domestic animals, but few studies have examined Malassezia species associated with more diverse host groups such as wildlife. While investigating the skin mycobiota of healthy bats, we isolated a Malassezia sp. that exhibited only up to 92 % identity with other known species in the genus for the portion of the DNA sequence of the internal transcribed spacer region that could be confidently aligned. The Malassezia sp. was cultured from the skin of nine species of bats in the subfamily Myotinae; isolates originated from bats sampled in both the eastern and western United...
Tipo: Article / Letter to the editor Palavras-chave: Chiroptera; Evolution; Hibernation; Malassezia; Myotis; New species; Phylogeny.
Ano: 2018 URL: http://www.repository.naturalis.nl/record/643310
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Megapode phylogeny and the interpretation of incubation strategies Naturalis
Dekker, R.W.R.J.; Brom, T.G..
Among megapodes, several incubation stategies can be recognized. Eggs are incubated by heat generated from microbial decomposition, volcanism, or the sun. For a long time, controversy has existed whether these strategies represent primitive traits, inherited from reptilian ancestors, or have evolved from the 'regular' way of incubation in birds. In this paper these strategies are interpreted by superimposing them on the most recent phylogenetic hypotheses regarding the inter- and intrafamilial relationships of megapodes. We conclude that similarities shared with reptiles and kiwis are due to convergence. Arguments are put forward that mound-building represents the plesiomorphic condition in megapodes and that burrow-nesting has been derived from it....
Tipo: Article / Letter to the editor Palavras-chave: Megapodiidae; Incubation-strategies; Evolution; Apterygidae.; 42.83.
Ano: 1992 URL: http://www.repository.naturalis.nl/record/317761
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Methods for detection of horizontal transfer of transposable elements in complete genomes Genet. Mol. Biol.
Carvalho,Marcos Oliveira de; Loreto,Elgion L.S..
Recent advances in nucleic acid sequencing technology are creating a diverse landscape for the analysis of horizontal transfer in complete genomes. Previously limited to prokaryotes, the availability of complete genomes from close eukaryotic species presents an opportunity to validate hypotheses about the patterns of evolution and mechanisms that drive horizontal transfer. Many of those methods can be transported from methods previously used in prokaryotic genomes, as the assumptions for horizontal transfer can be interpreted as the same. Some methods, however, require a complete adaptation, while others need refinements in sensitivity and specificity to deal with the huge datasets generated from next-generation sequencing technologies. Here we list the...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Transposable element; Horizontal transfer; Genome; Computational analysis; Evolution.
Ano: 2012 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572012000600024
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Mitochondrial genomes of genus Atta (Formicidae: Myrmicinae) reveal high gene organization and giant intergenic spacers Genet. Mol. Biol.
Barbosa,Josefa T. V.; Barbosa,Marcílio S.; Morais,Suzyane; Santana,Antônio E. G.; Almeida,Cicero.
Abstract The ants of the genus Atta are considered important pests to agriculture in the Americas, although Atta species are also important contributors to ecosystem functions in the various habitats in which they occur. The aim of this study was to assemble four complete mitochondrial genomes of the genus Atta, construct the phylogenomic tree, and analyze the gene content, order, and organization. The mitogenomes of A. colombica, A. opaciceps, A. texana, and A. sexdens rubropilosa comprise 18,392, 19,257, 19,709, and 19,748 bp, respectively. The four Atta mitogenomes showed the charactistics typical of those of insects, with 13 protein-coding genes, 22 tRNAs, and 2 rRNAs, with genes displayed in the conventional order. Analysis for intergenic spacer...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Ants; Evolution; Mitogenomes.
Ano: 2019 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572019000500801
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Modification du régime de salinité. Sous-région marine Mers celtiques. Evaluation initiale DCSMM. ArchiMer
Lazure, Pascal; Paillet, Jerome.
Tipo: Text Palavras-chave: Mers celtiques; Salinité; Variations naturelles; Evolution.
Ano: 2012 URL: https://archimer.ifremer.fr/doc/00328/43964/43537.pdf
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Molecular evolution of HoxA13 and the multiple origins of limbless morphologies in amphibians and reptiles Genet. Mol. Biol.
Singarete,Marina E.; Grizante,Mariana B.; Milograna,Sarah R.; Nery,Mariana F.; Kin,Koryu; Wagner,Günter P.; Kohlsdorf,Tiana.
Developmental processes and their results, morphological characters, are inherited through transmission of genes regulating development. While there is ample evidence that cis-regulatory elements tend to be modular, with sequence segments dedicated to different roles, the situation for proteins is less clear, being particularly complex for transcription factors with multiple functions. Some motifs mediating protein-protein interactions may be exclusive to particular developmental roles, but it is also possible that motifs are mostly shared among different processes. Here we focus on HoxA13, a protein essential for limb development. We asked whether the HoxA13 amino acid sequence evolved similarly in three limbless clades: Gymnophiona, Amphisbaenia and...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Development; Evolution; HoxA13; Molecular signatures; Limblessness.
Ano: 2015 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572015000300255
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Molecular phylogenetic analyses reveal a close evolutionary relationship between Podosphaera (Erysiphales: Erysiphaceae) and its rosaceous hosts Naturalis
Takamatsu, S.; Niinomi, S.; Harada, M.; Havrylenko, M..
Podosphaera is a genus of the powdery mildew fungi belonging to the tribe Cystotheceae of the Erysiphaceae. Among the host plants of Podosphaera, 86 % of hosts of the section Podosphaera and 57 % hosts of the subsection Sphaerotheca belong to the Rosaceae. In order to reconstruct the phylogeny of Podosphaera and to determine evolutionary relationships between Podosphaera and its host plants, we used 152 ITS sequences and 69 28S rDNA sequences of Podosphaera for phylogenetic analyses. As a result, Podosphaera was divided into two large clades: clade 1, consisting of the section Podosphaera on Prunus (P. tridactyla s.l.) and subsection Magnicellulatae; and clade 2, composed of the remaining member of section Podosphaera and subsection Sphaerotheca. Because...
Tipo: Article / Letter to the editor Palavras-chave: 28S rDNA; Evolution; ITS; Molecular clock; Phylogeny; Powdery mildew fungi; Rosaceae.
Ano: 2010 URL: http://www.repository.naturalis.nl/record/532391
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Morphological cladistic analysis of Pseudobombax Dugand (Malvaceae, Bombacoideae) and allied genera Rev. Bras. Bot.
Carvalho-Sobrinho,Jefferson Guedes de; Queiroz,Luciano Paganucci de.
(Morphological cladistic analysis of Pseudobombax Dugand (Malvaceae, Bombacoideae) and allied genera). Pseudobombax Dugand belongs to the family Malvaceae subfamily Bombacoideae and aggregates 29 species restricted to the Neotropics. A morphological cladistic analysis of Pseudobombax and allied genera was carried out to test the monophyly of the genus and to provide hypotheses on its phylogeny. Parsimony analyses were based on 40 morphological characters and 28 species, 14 belonging to Pseudobombax and 14 to other species of Bombacoideae, Matisieae (Malvoideae) and Ochromeae. Nine most parsimonious trees (144 steps, ci 0.40, ri 0.67) were produced when 10 multistate characters were taken as ordered while only two most parsimonious trees (139 steps, ci...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Biogeography; Evolution; Morphology; Phylogeny; Taxonomy.
Ano: 2011 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-84042011000200007
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Morphometric variation in island and mainland populations of two lizard species from the Pacific Coast of Mexico RChHN
Hernández-Salinas,Uriel; Ramírez-Bautista,Aurelio; Pavón,Numa P; Rosas Pacheco,Luis F.
BACKGROUND: Body size exerts a strong influence on the physiology, morphology, ecology, and evolution of other life history traits in vertebrates. We compared the morphometry and allometry of two lizard species (Anolis nebulosus and Aspidoscelis lineattissima) occurring on mainland and island populations on the Pacific Coast of Mexico in order to understand the effect of an insular environment on body size and other morphometric structures. RESULTS: Results showed that both males and females of A. nebulosus from San Pancho Island were larger in body size than those from the mainland. Moreover, males of A. lineattissima from Cocinas Island exhibited larger forms of most measured morphometric traits than those from the mainland, whereas females from both...
Tipo: Journal article Palavras-chave: Allometry; Anolis nebulosus; Aspidoscelis lineattissima; Islands; Evolution; Sexual dimorphism.
Ano: 2014 URL: http://www.scielo.cl/scielo.php?script=sci_arttext&pid=S0716-078X2014000100018
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Multiple new Phytophthora species from ITS Clade 6 associated with natural ecosystems in Australia: evolutionary and ecological implications Naturalis
Jung, T.; Stukely, M.J.C.; Hardy, G.E.St.J.; White, D.; Paap, T.; Dunstan, W.A.; Burgess, T.I..
During surveys of dying vegetation in natural ecosystems and associated waterways in Australia many new taxa have been identified from Phytophthora ITS Clade 6. For representative isolates, the region spanning the internal transcribed spacer region of the ribosomal DNA, the nuclear gene encoding heat shock protein 90 and the mitochondrial cox1 gene were PCR amplified and sequenced. Based on phylogenetic analysis and morphological and physiological comparison, four species and one informally designated taxon have been described; Phytophthora gibbosa, P. gregata, P. litoralis, P. thermophila and P. taxon paludosa. Phytophthora gibbosa, P. gregata and P. taxon paludosa form a new cluster and share a common ancestor; they are homothallic and generally...
Tipo: Article / Letter to the editor Palavras-chave: Aquatic habitat; Breeding systems; Evolution; Phylogeny; Radiation; Sterility; Survival.
Ano: 2011 URL: http://www.repository.naturalis.nl/record/532234
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Nature4Life: Knowledge agenda for research into biodiversity, ecology and evolution Naturalis
Biesmeijer, K.; Knoben, N..
The biggest social problems that we need to find answers to in the coming decades will concern food, water, economy, climate and quality of life, health and well-being. Although these are global issues, Dutch knowledge institutions are in a great position to make a major contribution to finding appropriate solutions.
Tipo: Report Palavras-chave: Biodiversity; Ecology; Evolution; Biodiversity research.
Ano: 2017 URL: http://www.repository.naturalis.nl/record/632270
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